Cloud deployment and integration of university hospital optimised whole-exome pipeline

Accelerating Healthcare Genomics Through Optimized Cloud Deployment

Our client’s requirement

Our client, a healthcare institution in the EU, collaborated with Excelra to deploy cloud migration via our cloud enablement services and optimize their whole-exome pipeline on a secure platform. The goal was to enhance efficiency and scalability while ensuring secure scientific data management and compliance for high-throughput genomic data.

Our approach

We implemented secure HPC EU Cloud compute using virtual private subnets and NACLs, streamlined genomic data life-cycles, and facilitated direct data uploads from sequencers into an optimized pipeline on the Excelra Cloud Solution. Versioning and reproducible pipeline maintenance were managed via shared GitHub and deployed through our online pipeline platform. Throughout the engagement, we applied scientific informatics and secure data practices to improve throughput, reduce time-to-result for genomic workflows, and enable downstream bioinformatics solutions and analysis.

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